CLI Reference

Global

biofilter [--db-uri URI] [--debug] COMMAND ...

Groups:

  • config

  • db

  • etl

  • report

Config

  • biofilter config show

  • biofilter config get SECTION.KEY

  • biofilter config set SECTION.KEY VALUE

  • biofilter config init --path .

DB

  • biofilter db ping

  • biofilter db create-db

  • biofilter db migrate

  • biofilter db upgrade

  • biofilter db backup

  • biofilter db restore

  • biofilter db export

  • biofilter db import

ETL

  • biofilter etl update

  • biofilter etl update-all

  • biofilter etl explain

  • biofilter etl status

  • biofilter etl restart

  • biofilter etl rollback

  • biofilter etl index

Report

  • biofilter report list

  • biofilter report explain --report-name <name>

  • biofilter report example-input --report-name <name>

  • biofilter report available-columns --report-name <name>

  • biofilter report run --report-name <name> [options]

Key report run options:

  • --input, --input-file, --input-column

  • --param, --params-json, --params-file

  • --params-template

  • --output